PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do021429.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 389aa    MW: 41365.2 Da    PI: 5.6569
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do021429.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.5e-13159210155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h ++Er+RR+++N+ +  Lr+l+P +   + ++ + a+i   A+e+I++L+
  Do021429.1 159 QRMTHIAVERNRRRQMNEYLRILRSLMPGS---YVQRGDQASIIGGAIEFIRELE 210
                 79****************************...9******************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.77E-14157214No hitNo description
Gene3DG3DSA:4.10.280.102.2E-13157213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-17158223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.847158209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-11159210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-9164215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010377Biological Processguard cell fate commitment
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MVDYMLGQAP PPAQTTPQSQ VSFDKLSFSD VLQFADFGPK LALNQPAASA GARDGVDNGA  60
DDDDDGYFFR FQSLPSLLGA AAPPRGSAGQ QHHADHEGSK TTAEDGGAHD GCGAGVSEST  120
TLVQNADGGG RAEKGGDQGK SGRRKRPRSV KTSEEVESQR MTHIAVERNR RRQMNEYLRI  180
LRSLMPGSYV QRGDQASIIG GAIEFIRELE QLIQCLESQK RRRLYGGSGD APRPVVDAAG  240
AGAPTSTQQH HQPQVPPATP FFPPSLPFPV ASGGCGDGAA AKILDLEAGG ADAGGLREEV  300
AENKSCLADI EVRALGADAM IKILSRRRPG QLIKTIAALE DMQMSILHTN ITTIEQTVLY  360
SFNCFSSVSL TLLWVPTAIK LPSSQDDSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159170RMTHIAVERNRR
2219223KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277501e-129KJ727750.1 Zea mays clone pUT5691 bHLH transcription factor (bHLH22) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961059.10.0PREDICTED: transcription factor FAMA
SwissprotQ56YJ84e-99FAMA_ARATH; Transcription factor FAMA
TrEMBLK3Z5L60.0K3Z5L6_SETIT; Uncharacterized protein
STRINGSi021834m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95023340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.19e-55bHLH family protein